This is a list I made when doing mine. Hope it helps.
Rob
96/97 -
fuel rails with FPR
throttle cable
throttle cable bracket
forward fuel lines (from filter to rails)
EGR tube (the explorer one works if your engine comes with one)
PI parts
Mustang PI intake with updated cross-over
intake gaskets
oil filter/lower rad hose housing gasket (I mocked up both 95 and 02, and the 02 model sealed the best)
your choice of torque converter, Flexplate, and hardware (might as well with the engine out)
95 parts I replaced just to be safe
front cover gaskets (3 parts)
front cover crank seal
valve cover gaskets
oil pan gasket
exhaust manifold gaskets
t-stat housing o-ring
fuel injector o-rings
oil pick-up tube o-ring????
2 front 02 sensors
fuel filter, oil filter, mobil 1 oil, Mercon V, anti-freeze
will reuse from 95
Alternator bracket (can make mine work)
front cover
valve covers
oil pan
oil pick-up tube
dipstick
coil packs, plugs and wires (new)
fuel injectors
sensors
A/C compressor
alt
PS pump
oil filer adapter
Exhaust Manifolds