The goal is to keep the car in closed loop so the O2 feedback allows the PCM keep the lambda at a perfect 1.0. We examine the STFTs and can see how far off the MAF sensor measurements are throughout the normal operating range. This is actually how tuners fine tune the MAF transfer function after dialing in the rough curves using a wideband O2 sensor on a dyno - but that's a different chapter.
The car will switch to open loop if you exceed about 70% throttle, so keep your foot out of the pedal. Using manual 2 is probably the easiest/safest way to accomplish getting this data.
The MAF counts (or airflow values if you don't have AD counts) should be a nice, smooth line (like you saw in my graph on the other page). If the MAF is behaving correctly, the STFTs should stay within a couple percent of 1.0 throughout the whole run as well. Obviously the MAF needs to be connected, but also leave the battery disconnected for a couple minutes to reset any LTFTs and be sure the car is up to operating temp. before the data run. 180 degrees is sufficient (use your scan tool to verify if you aren't sure). I would examine the STFTs for both bank 0 and 1, MAF counts (or airflow), TP relative, RPM, load and fuel source.
Look for both banks of STFT to stay within a percent or two of each other (regardless of their values - larger variances could mean faulty O2 sensor(s) or exhaust leaks), and within a couple percent of 1.00, with the normal switching I described earlier. If it goes down suddenly (with a change in fuel source value) it could mean the PCM switched to open loop - which throws off the data run. The MAF counts should increase steadily with RPM. As the RPM increases, the rate at which the MAF counts (or airflow) increases will decrease as long as TP stays constant.
If the STFTs are consistently more than a few percent under 1.00 at idle but after opening the throttle it goes back up to about 1, that is a classic sign of a vacuum leak. STFTs that are significantly off across the board would mean something else - a bad set of O2s, FPR, MAF, IAT or ECT as examples. A vacuum leak lets in a given amount of air that doesn't really change. That particular amount has the biggest impact on fuel delivery calculations at low RPM and load, since it's a larger percentage of the total air entering the engine. As you open the throttle for normal driving and let more air in, that fixed leak becomes a much smaller total percentage of the total air ingested and fueling gets more accurate. Remember the PCM only expects to deliver fuel based on the air measurement reported by the MAF sensor. Vacuum leak (aka unmetered air) is extra air the PCM doesn't know about.
Remember, if the STFT is below 1, the PCM is commanding a richer mixture. Over 1.00, and it is commanding a leaner mixture.
The fact that the car runs better consistently with the MAF disconnected, forcing it to use the load_with_failed_MAF table (delivering fuel and spark based on RPM and TP, without any MAF sensor's data) leads me to believe the most likely culprit is the MAF, or the MAF sensor circuit having issues.
The only thing I'm having to adapt to is how your scan tool presents data. My ScanGaugeII and LiveLink give me two different numbers for engine load, for example...